veyepar: Using containers to analyse the impact of climate change

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Name: Using containers to analyse the impact of climate change
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Author(s):	Eric Burgueño
Location	C2
Date	jan Thu 24	Days Raw Files
Start	11:35	First Raw Start	11:13
Duration	0:45:0	Offset	0:21:38
End	12:20	Last Raw End	12:28
Chapters	00:00 0:08:49
Total cuts_time	30 min.

https://2019.linux.conf.au/schedule/presentation/186/
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assets release.pdf Using_containers_to_analyse_the_impact_of_climate_change_and_soil_on_New_Zealand_crops.json
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Predicting crop productivity and environmental outcomes of agricultural systems requires modelling quantitative data around soil characteristics (e.g.: nutrients and soil water dynamics) and climate information. Traditionally, the scientific research community runs these simulations using standard desktops.

When the simulations need to be done at scale (ie: wide-area, or landscape scale), detailed quantitative soil information is not always available. This leads to generalisations and simplifications, which may affect the resulting estimates in ways unknown. However, when there is detailed information, the compute capacity required to analyse that data grows beyond what a standard desktop can handle within the average human lifespan.

In this talk, I will share our experiences creating a new data processing pipeline using software containers (Docker and Singularity), that allows processing of vast amounts of high-resolution soil and weather data in a scalable way. This system has already been used in a case study to simulate productivity and environmental aspects of a multi-year crop rotation system across a catchment in the Hawke’s Bay region of New Zealand, at a 5 arc-min grid-cell resolution (~5 km grid size).

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2019-01-24/11_13_22.ts Apply: 11:13:22 - 11:24:29 ( 00:11:07 ) S: 11:13:22 - E: 11:43:21 D: 00:29:59 (End: 667.0) show more...

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	11:43:21		seconds: 667.0 Wall: 11:24:29
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2019-01-24/11_13_22.ts Apply: 11:24:29 - 11:24:31 ( 00:00:02 ) S: 11:13:22 - E: 11:43:21 D: 00:29:59 (Start: 667.0) (End: 669.0) show more...

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	11:43:21		seconds: 669.0 Wall: 11:24:31
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2019-01-24/11_13_22.ts Apply: 11:24:31 - 11:34:47 ( 00:10:16 ) S: 11:13:22 - E: 11:43:21 D: 00:29:59 (Start: 669.0) (End: 1285.0) show more...

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Duration	00:29:59
	11:43:21		seconds: 1285.0 Wall: 11:34:47
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2019-01-24/11_13_22.ts Apply: 11:34:31 - 11:43:21 ( 00:08:49 ) S: 11:13:22 - E: 11:43:21 D: 00:29:59 (Start: 1269.626809) show more...

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	11:13:22		seconds: 1269.626809 Wall: 11:34:31
Duration	00:29:59
	11:43:21		seconds: 0.0 Wall: 11:13:22
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mp4 mp4.m3u	dv.m3u	Split: Sequence:: delete

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2019-01-24/11_43_22.ts Apply: 11:43:22 - 12:05:17 ( 00:21:55 ) S: 11:43:22 - E: 12:13:22 D: 00:30:00 (End: 1315.389027) show more...

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	11:43:22		seconds: 0.0 Wall: 11:43:22
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	12:13:22		seconds: 1315.389027 Wall: 12:05:17
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2019-01-24/11_43_22.ts Apply: 12:05:11 - 12:13:22 ( 00:08:11 ) S: 11:43:22 - E: 12:13:22 D: 00:30:00 (Start: 1309.0) show more...

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	11:43:22		seconds: 1309.0 Wall: 12:05:11
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2019-01-24/12_13_22.ts Apply: 12:13:22 - 12:28:54 ( 00:15:32 ) S: 12:13:22 - E: 12:28:54 D: 00:15:32 show more...

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