Open Bioinformatics Foundation<br>
BOSC 2014<br>
 1. A History of Bioinformatics (in the Year 2039) (C. Titus Brown) http://www.youtube.com/watch?v=uwsjwMO-TEA 57 min.<br>
 2. ADAM: Fast, Scalable Genomic Analysis (Frank Austin Nothaft) http://www.youtube.com/watch?v=EtAWRuvuwr8 16 min.<br>
 3. Automated RNA-seq Differential Expression Validation (Rory Kirchner) http://www.youtube.com/watch?v=_LTaNFY9IjM 12 min.<br>
 4. New Frontiers of Genome Assembly with SPAdes 3.1 (Andrey Prjibelski) http://www.youtube.com/watch?v=vFA7BGzNMss 11 min.<br>
 5. SigSeeker: An Ensemble for Analysis of Epigenetic Data (Jens Lichtenberg) http://www.youtube.com/watch?v=3gTEoyVNA6Q 16 min.<br>
 6. Galaxy as an Extensible Job Execution Platform (John Chilton) http://www.youtube.com/watch?v=XLh_Q4Q0YBE 14 min.<br>
 7. Open Bioinformatics Foundation (OBF) update (Hilmar Lapp) http://www.youtube.com/watch?v=1oSTb8ZAxec 20 min.<br>
 8. Connecting computational steps for NGS, and beyond. (Laurent Gautier) None 5 min.<br>
 9. Updates to MISO, the open-source NGS LIMS project (Xingdong Bian) None 5 min.<br>
 10. Running Taverna Workflows within IPython Notebook (Alan Williams / Aleksandra Pawlik (TBC)) None 5 min.<br>
 11. Reconstruction of ancestral genomes in presence of gene gain and loss (Shuai Jiang) None 5 min.<br>
 12. Firehose in The Cancer Genome Atlas: Rigorous Open Science, At Scale (Michael Noble) None 5 min.<br>
 13. GEPETTO Update: An Open Source Framework for Gene Prioritization (Hoan Nguyen) None 5 min.<br>
 14. NeoPipe: An Open Source Framework for Protein sequence analysis (Hoan Nguyen) None 5 min.<br>
 15. MyGene.info updates: scalable gene-centric web services with user contributions (Chunlei Wu) None 5 min.<br>
 16. Aiding the journey from data to publication in the plant sciences (Robert Davey) None 5 min.<br>
 17. Bio2RDF mobile: an app for biological semantic web databases (Maxime Déraspe) None 5 min.<br>
 18. WormGUIDES: an Interactive Informatic Developmental Atlas at Subcellular Resolution (Anthony Santella) http://www.youtube.com/watch?v=uxPnmyGydW4 16 min.<br>
 19. BioJS: an Open Source Standard for Biological Visualisation (Manuel Corpas) http://www.youtube.com/watch?v=aHtXNW-I2U0 20 min.<br>
 20. Biodalliance: a Fast, Extensible Genome Browser (Thomas Down) http://www.youtube.com/watch?v=l4Z7wsppCaM 19 min.<br>
 21. TGAC Browser: Visualisation Solutions for Big Data in the Genomic Era (Anil S. Thanki) http://www.youtube.com/watch?v=yKx8lE2WQzI 17 min.<br>
 22. Explore, Analyze, and Share Genomic Data Using Integrated Genome Browser (Ann Loraine) http://www.youtube.com/watch?v=b7O9rN2i0GM 18 min.<br>
 23. BioMart 0.9 - Introducing Tools for Data Analysis and Visualisation (Luca Pandini) http://www.youtube.com/watch?v=XJmyC1sfFeg 11 min.<br>
 24. Biocaml: The OCaml Bioinformatics Library (Ashish Agarwal) http://www.youtube.com/watch?v=0lDWzyhdyP8 12 min.<br>
 25. BioRuby and Distributed Development (Pjotr Prins) http://www.youtube.com/watch?v=tRpxLmu4w3w 11 min.<br>
 26. Biopython Project Update (Wibowo Arindrarto) http://www.youtube.com/watch?v=bJ5OcCYq-G4 10 min.<br>
 27. Shared Bioinformatics Database Within Unipro UGENE (Ivan Protsyuk) http://www.youtube.com/watch?v=tS57J2JeL-Y 8 min.<br>
 28. Fostering the Next Generation of Data-driven Open Science with R (Karthik Ram) http://www.youtube.com/watch?v=p4hbpb3d6v8 4 min.<br>
 29. Tripal: an Open Source Toolkit for Building Genomic and Genetic Data Websites and Databases (Margaret Staton) http://www.youtube.com/watch?v=-IUr8Tghvsw 4 min.<br>
 30. PLUTo: Phyloinformatic Literature Unlocking Tools (Ross Mounce) http://www.youtube.com/watch?v=qX0ocTMc8MY 5 min.<br>
 31. A Publication Model that Aligns with the Key Open Source Software Principles (Michael L. Markie) http://www.youtube.com/watch?v=iWQXfyFtRUU 5 min.<br>
 32. Codefest 2014 Report (Brad Chapman) http://www.youtube.com/watch?v=EuWgm6V9DgI 8 min.<br>
 33. Biomedical Research as an Open Digital Enterprise (Philip Bourne) http://www.youtube.com/watch?v=VmRNkdHKJgA 65 min.<br>
 34. Pathview: an R/Bioconductor Package for Pathway-based Data Integration and Visualization (Weijun Luo) http://www.youtube.com/watch?v=sne_Nb9au20 16 min.<br>
 35. Use of Semantically Annotated Resources in the Mobyle2 Web Framework (Hervé Ménager) http://www.youtube.com/watch?v=5sYUuoXOBiE 18 min.<br>
 36. Towards Ubiquitous OWL Computing: Simplifying Programmatic Authoring of and Querying with OWL Axioms (Hilmar Lapp) http://www.youtube.com/watch?v=K0SlYwMyn-A 18 min.<br>
 37. Integrating Taverna Player into Scratchpads (Robert Haines) http://www.youtube.com/watch?v=iL-rMaFtYdM 16 min.<br>
 38. Small Tools for Bioinformatics (Pjotr Prins) http://www.youtube.com/watch?v=8jHbvClB1i8 14 min.<br>
 39. Tripal: an open source toolkit for building genomic and genetic data websites and databases (Margaret Staton) None 5 min.<br>
 40. Tripal: an open source toolkit for building genomic and genetic data websites and databases (Margaret Staton) None 5 min.<br>
 41. BioBuilds: A Model for Long Term Sustainability of Open Source Bioinformatics (Chris Mueller) None 5 min.<br>
 42. SEEK for Science: A Data Management Platform which Supports Open and Reproducible Science (Carole Goble) http://www.youtube.com/watch?v=g8b98kJwT60 19 min.<br>
 43. Arvados: Achieving Computational Reproducibility and Data Provenance in Large-Scale Genomic Analyses (Brett Smith) http://www.youtube.com/watch?v=ZFAaJfzwxW4 17 min.<br>
 44. Enhancing the Galaxy Experience through Community Involvement (Daniel Blankenberg) http://www.youtube.com/watch?v=z-Z1cuOO4ts 17 min.<br>
 45. Supporting Dynamic Community Developed Biological Pipelines (Brad Chapman) None 12 min.<br>
 46. &#x27;Open&#x27; as a Strategy for Durability, Reproducibility and Scalability (Jonathan Rees) http://www.youtube.com/watch?v=TMzWRQUbO4U 0 min.<br>
 47. Panel : Reproducibility: Rewards and Challenges (Phil Bourne, Titus Brown, Varsha Khodiyar,  Kaitlin Thaney
) http://www.youtube.com/watch?v=65Rx89eZWpU 58 min.<br>

<hr>
  1. http://www.youtube.com/watch?v=uwsjwMO-TEA 57 min.<br>
  2. http://www.youtube.com/watch?v=EtAWRuvuwr8 16 min.<br>
  3. http://www.youtube.com/watch?v=_LTaNFY9IjM 12 min.<br>
  4. http://www.youtube.com/watch?v=vFA7BGzNMss 11 min.<br>
  5. http://www.youtube.com/watch?v=3gTEoyVNA6Q 16 min.<br>
  6. http://www.youtube.com/watch?v=XLh_Q4Q0YBE 14 min.<br>
  7. http://www.youtube.com/watch?v=1oSTb8ZAxec 20 min.<br>
  8. None 5 min.<br>
  9. None 5 min.<br>
  10. None 5 min.<br>
  11. None 5 min.<br>
  12. None 5 min.<br>
  13. None 5 min.<br>
  14. None 5 min.<br>
  15. None 5 min.<br>
  16. None 5 min.<br>
  17. None 5 min.<br>
  18. http://www.youtube.com/watch?v=uxPnmyGydW4 16 min.<br>
  19. http://www.youtube.com/watch?v=aHtXNW-I2U0 20 min.<br>
  20. http://www.youtube.com/watch?v=l4Z7wsppCaM 19 min.<br>
  21. http://www.youtube.com/watch?v=yKx8lE2WQzI 17 min.<br>
  22. http://www.youtube.com/watch?v=b7O9rN2i0GM 18 min.<br>
  23. http://www.youtube.com/watch?v=XJmyC1sfFeg 11 min.<br>
  24. http://www.youtube.com/watch?v=0lDWzyhdyP8 12 min.<br>
  25. http://www.youtube.com/watch?v=tRpxLmu4w3w 11 min.<br>
  26. http://www.youtube.com/watch?v=bJ5OcCYq-G4 10 min.<br>
  27. http://www.youtube.com/watch?v=tS57J2JeL-Y 8 min.<br>
  28. http://www.youtube.com/watch?v=p4hbpb3d6v8 4 min.<br>
  29. http://www.youtube.com/watch?v=-IUr8Tghvsw 4 min.<br>
  30. http://www.youtube.com/watch?v=qX0ocTMc8MY 5 min.<br>
  31. http://www.youtube.com/watch?v=iWQXfyFtRUU 5 min.<br>
  32. http://www.youtube.com/watch?v=EuWgm6V9DgI 8 min.<br>
  33. http://www.youtube.com/watch?v=VmRNkdHKJgA 65 min.<br>
  34. http://www.youtube.com/watch?v=sne_Nb9au20 16 min.<br>
  35. http://www.youtube.com/watch?v=5sYUuoXOBiE 18 min.<br>
  36. http://www.youtube.com/watch?v=K0SlYwMyn-A 18 min.<br>
  37. http://www.youtube.com/watch?v=iL-rMaFtYdM 16 min.<br>
  38. http://www.youtube.com/watch?v=8jHbvClB1i8 14 min.<br>
  39. None 5 min.<br>
  40. None 5 min.<br>
  41. None 5 min.<br>
  42. http://www.youtube.com/watch?v=g8b98kJwT60 19 min.<br>
  43. http://www.youtube.com/watch?v=ZFAaJfzwxW4 17 min.<br>
  44. http://www.youtube.com/watch?v=z-Z1cuOO4ts 17 min.<br>
  45. None 12 min.<br>
  46. http://www.youtube.com/watch?v=TMzWRQUbO4U 0 min.<br>
  47. http://www.youtube.com/watch?v=65Rx89eZWpU 58 min.<br>




<hr>
 1, A History of Bioinformatics (in the Year 2039), A_History_of_Bioinformatics_in_the_Year_2039.mp4, 57<br>
 2, ADAM: Fast, Scalable Genomic Analysis, ADAM_Fast_Scalable_Genomic_Analysis.mp4, 16<br>
 3, Automated RNA-seq Differential Expression Validation, A_Framework_for_Benchmarking_RNAseq_Pipelines.mp4, 12<br>
 4, New Frontiers of Genome Assembly with SPAdes 3.1, New_Frontiers_of_Genome_Assembly_with_SPAdes_31.mp4, 11<br>
 5, SigSeeker: An Ensemble for Analysis of Epigenetic Data, SigSeeker_An_Ensemble_for_Analysis_of_Epigenetic_Data.mp4, 16<br>
 6, Galaxy as an Extensible Job Execution Platform, Galaxy_as_an_Extensible_Job_Execution_Platform.mp4, 14<br>
 7, Open Bioinformatics Foundation (OBF) update, Open_Bioinformatics_Foundation_OBF_update.mp4, 20<br>
 8, Connecting computational steps for NGS, and beyond., Connecting_computational_steps_for_NGS_and_beyond.mp4, 5<br>
 9, Updates to MISO, the open-source NGS LIMS project, Updates_to_MISO_the_opensource_NGS_LIMS_project.mp4, 5<br>
 10, Running Taverna Workflows within IPython Notebook, Running_Taverna_Workflows_within_IPython_Notebook.mp4, 5<br>
 11, Reconstruction of ancestral genomes in presence of gene gain and loss, Reconstruction_of_ancestral_genomes_in_presence_of_gene_gain_and_loss.mp4, 5<br>
 12, Firehose in The Cancer Genome Atlas: Rigorous Open Science, At Scale, Firehose_in_The_Cancer_Genome_Atlas_Rigorous_Open_Science_At_Scale.mp4, 5<br>
 13, GEPETTO Update: An Open Source Framework for Gene Prioritization, GEPETTO_Update_An_Open_Source_Framework_for_Gene_Prioritization.mp4, 5<br>
 14, NeoPipe: An Open Source Framework for Protein sequence analysis, NeoPipe_An_Open_Source_Framework_for_Protein_sequence_analysis.mp4, 5<br>
 15, MyGene.info updates: scalable gene-centric web services with user contributions, MyGeneinfo_updates_scalable_genecentric_web_services_with_user_contributions.mp4, 5<br>
 16, Aiding the journey from data to publication in the plant sciences, Aiding_the_journey_from_data_to_publication_in_the_plant_sciences.mp4, 5<br>
 17, Bio2RDF mobile: an app for biological semantic web databases, Bio2RDF_mobile_an_app_for_biological_semantic_web_databases.mp4, 5<br>
 18, WormGUIDES: an Interactive Informatic Developmental Atlas at Subcellular Resolution, WormGUIDES_an_Interactive_Informatic_Developmental_Atlas_at_Subcellular_Resolution.mp4, 16<br>
 19, BioJS: an Open Source Standard for Biological Visualisation, BioJS_an_Open_Source_Standard_for_Biological_Visualisation.mp4, 20<br>
 20, Biodalliance: a Fast, Extensible Genome Browser, Biodalliance_a_Fast_Extensible_Genome_Browser.mp4, 19<br>
 21, TGAC Browser: Visualisation Solutions for Big Data in the Genomic Era, TGAC_Browser_Visualisation_Solutions_for_Big_Data_in_the_Genomic_Era.mp4, 17<br>
 22, Explore, Analyze, and Share Genomic Data Using Integrated Genome Browser, Explore_Analyze_and_Share_Genomic_Data_Using_Integrated_Genome_Browser.mp4, 18<br>
 23, BioMart 0.9 - Introducing Tools for Data Analysis and Visualisation, BioMart_09_Introducing_Tools_for_Data_Analysis_and_Visualisation.mp4, 11<br>
 24, Biocaml: The OCaml Bioinformatics Library, Biocaml_The_OCaml_Bioinformatics_Library.mp4, 12<br>
 25, BioRuby and Distributed Development, BioRuby_and_Distributed_Development.mp4, 11<br>
 26, Biopython Project Update, Biopython_Project_Update.mp4, 10<br>
 27, Shared Bioinformatics Database Within Unipro UGENE, Shared_Bioinformatics_Database_Within_Unipro_UGENE.mp4, 8<br>
 28, Fostering the Next Generation of Data-driven Open Science with R, Fostering_the_Next_Generation_of_Datadriven_Open_Science_with_R.mp4, 4<br>
 29, Tripal: an Open Source Toolkit for Building Genomic and Genetic Data Websites and Databases, Tripal_an_Open_Source_Toolkit_for_Building_Genomic_and_Genetic_Data_Websites_and_Databases.mp4, 4<br>
 30, PLUTo: Phyloinformatic Literature Unlocking Tools, PLUTo_Phyloinformatic_Literature_Unlocking_Tools.mp4, 5<br>
 31, A Publication Model that Aligns with the Key Open Source Software Principles, A_Publication_Model_that_Aligns_with_the_Key_Open_Source_Software_Principles.mp4, 5<br>
 32, Codefest 2014 Report, Codefest_2014_Report.mp4, 8<br>
 33, Biomedical Research as an Open Digital Enterprise, Biomedical_Research_as_an_Open_Digital_Enterprise.mp4, 65<br>
 34, Pathview: an R/Bioconductor Package for Pathway-based Data Integration and Visualization, Pathview_an_RBioconductor_Package_for_Pathwaybased_Data_Integration_and_Visualization.mp4, 16<br>
 35, Use of Semantically Annotated Resources in the Mobyle2 Web Framework, Use_of_Semantically_Annotated_Resources_in_the_Mobyle2_Web_Framework.mp4, 18<br>
 36, Towards Ubiquitous OWL Computing: Simplifying Programmatic Authoring of and Querying with OWL Axioms, Towards_Ubiquitous_OWL_Computing_Simplifying_Programmatic_Authoring_of_and_Querying_with_OWL_Axioms.mp4, 18<br>
 37, Integrating Taverna Player into Scratchpads, Integrating_Taverna_Player_into_Scratchpads.mp4, 16<br>
 38, Small Tools for Bioinformatics, Small_Tools_for_Bioinformatics.mp4, 14<br>
 39, Tripal: an open source toolkit for building genomic and genetic data websites and databases, Tripal_an_open_source_toolkit_for_building_genomic_and_genetic_data_websites_and_databases.mp4, 5<br>
 40, Tripal: an open source toolkit for building genomic and genetic data websites and databases, Tripal_an_Open_Source_Toolkit_for_Building_Genomic_and_Genetic_Data_Websites_and_Databases.mp4, 5<br>
 41, BioBuilds: A Model for Long Term Sustainability of Open Source Bioinformatics, BioBuilds_A_Model_for_Long_Term_Sustainability_of_Open_Source_Bioinformatics.mp4, 5<br>
 42, SEEK for Science: A Data Management Platform which Supports Open and Reproducible Science, SEEK_for_Science_A_Data_Management_Platform_which_Supports_Open_and_Reproducible_Science.mp4, 19<br>
 43, Arvados: Achieving Computational Reproducibility and Data Provenance in Large-Scale Genomic Analyses, Arvados_Achieving_Computational_Reproducibility_and_Data_Provenance_in_LargeScale_Genomic_Analyses.mp4, 17<br>
 44, Enhancing the Galaxy Experience through Community Involvement, Enhancing_the_Galaxy_Experience_through_Community_Involvement.mp4, 17<br>
 45, Supporting Dynamic Community Developed Biological Pipelines, Supporting_Dynamic_Community_Developed_Biological_Pipelines.mp4, 12<br>
 46, &#x27;Open&#x27; as a Strategy for Durability, Reproducibility and Scalability, Open_as_a_Strategy_for_Durability_Reproducibility_and_Scalability.mp4, 0<br>
 47, Panel : Reproducibility: Rewards and Challenges, Panel_Reproducibility_Rewards_and_Challenges.mp4, 58<br>